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Looking to Automate QuickBooks?

  • Writer: Denice Sakakeeny
    Denice Sakakeeny
  • Apr 30
  • 3 min read

Updated: 5 days ago

Increase Leverage with Light Tech

It’s not uncommon for me, as a fractional CFO, to inherit a mountain of paper invoices, a patchwork of Excel workbooks, and a back-office team burning midnight oil every month-end—sometimes still taking three weeks to close. Fifteen years into my career, I can confidently say: automation isn’t just a cost-saver—it’s a strategic part of the back office.

Thankfully, finance automation is not this complex.
Thankfully, finance automation is not this complex.

From Manual Mayhem to Seamless Workflows

In one engagement, the AP team coded and approved hundreds of supplier invoices each week by hand. Mistakes were common, and approvals were non-existent. We piloted an invoice-capture solution with Stampli, which integrates directly with QuickBooks Online. Its OCR read and coded invoices automatically, routed them for approval, and pushed journal entries into QuickBooks—no more data entry. Processing time dropped by 70%, the team could redeploy people to higher-value tasks, and the CEO slept better.


RPA for Tedious Tasks

Repetitive journal entries, balance sheet reconciliations, and intercompany eliminations can be handed off to bots. One client’s month-end close included over 50 intercompany entries—each taking 10 minutes of manual effort. Using UiPath to interact with QuickBooks Desktop, we logged in, ran reports, and posted entries automatically. The result was a 40% faster close and zero human errors.


Smart Reconciliation with Continuous Controls

Traditional reconciliation happens weeks after transactions clear. Continuous reconciliation platforms watch in real time, flagging mismatches immediately. Integrating FloQast with QuickBooks caught discrepancies between the bank feed and the ledger on the same day—restoring calm to the accounting team and shaving two days off the close.


Expense Management without the Headache

Tired expense reports and lost receipts? I’ve onboarded numerous clients onto Expensify, which syncs seamlessly with QuickBooks. Employees snap receipts with their phones, expenses auto-code, and approvals trigger instantly. Reimbursement cycles went from three weeks to three days.


QuickBooks Integrations to Consider

  • Bill.com: Automates bill payments and syncs AP data with QuickBooks Online/Desktop, managing approvals and payments in one place.

  • Hubdoc: Captures receipts and statements, auto-extracts data, and publishes to QuickBooks.

  • Transaction Pro: Bulk imports and exports data between QuickBooks and Excel, ideal for large updates.

  • AutoEntry: OCR-based data capture for bills and invoices, syncing directly to QuickBooks.

  • Melio: Simplifies vendor payments via ACH, bank transfers, or credit card—integrated with QuickBooks without fees.

  • Synder: Syncs transactions from Stripe, PayPal, and other platforms into QuickBooks with accurate categorizations.


Integrations & the Power of the API Economy

Point solutions excel individually, but real magic happens when data flows seamlessly between them and QuickBooks. Use Zapier or Workato to link QuickBooks with CRM, expense, and time-tracking systems—eliminating spreadsheet exports and copy-paste errors. That single source of truth gives leadership live visibility into pipeline, revenues, and cash impact.


Pro Tips for a Smooth Automation Journey

  1. Start with Your Biggest Pain Point. For many QuickBooks users, AP automation via Bill.com or Stampli delivers the quickest ROI. This also is the easiest to build out - start with a win!

  2. Pilot Before You Scale. Test with a small team in a QuickBooks sandbox, refine workflows, then roll out broadly. This is to build confidence in the systems and so you can build some early champions.

  3. Design for Exceptions. Configure integrations to flag anomalies in QuickBooks—don’t let automation create a backlog of unresolved errors. The goal is not to replace humans but to use their intelligence more wisely.

  4. Invest in Change Management. Train your team on new tools and processes. Celebrate quick wins to build enthusiasm and drive home the message that change can be used for good.

  5. Plan for Governance. Document automated workflows, maintain integration logs, and set up alerts in QuickBooks for exceptions so you always know if your systems are working as designed.


Every Human Has A Highest and Best Use

By embracing QuickBooks-compatible automation—invoice capture, RPA, continuous reconciliation, and expense management—you can transform your back office into a trusted, agile, streamlined powerhouse. I've been able to free people from soul sucking repetitive tasks and put them to their highest and best use in the organization, increasing job satisfaction, retention and productivity. It's not a nice to have, it is operational excellence in action.


 
 
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